Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Noca_2926KEGG: rha:RHA1_ro11202 hypothetical protein. (99 aa)    
Predicted Functional Partners:
Noca_2925
PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: nfa:pnf1230 putative multicopper oxidase.
       0.791
Noca_2927
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; KEGG: rha:RHA1_ro11232 probable transcriptional regulator, ArsR family.
       0.507
Noca_2930
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro11229 possible hydroxyacylglutathione hydrolase.
       0.430
Noca_2928
KEGG: rha:RHA1_ro11231 hypothetical protein.
       0.403
Noca_2929
PFAM: protein of unknown function DUF202; KEGG: rha:RHA1_ro11230 hypothetical protein.
       0.403
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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