STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2932PFAM: SirA family protein; KEGG: rha:RHA1_ro11227 hypothetical protein; Belongs to the sulfur carrier protein TusA family. (77 aa)    
Predicted Functional Partners:
Noca_3142
Cysteine desulfurase; PFAM: aminotransferase, class V; KEGG: sco:SCO2157 aminotransferase.
 
 
 0.969
Noca_3446
PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sma:SAV2756 putative pyridoxal-phosphate-dependent aminotransferase.
   
 0.965
Noca_2931
KEGG: rha:RHA1_ro11228 possible NADH dehydrogenase.
 
  
 0.944
Noca_3143
PFAM: SirA family protein; KEGG: sma:SAV6046 aminotransferase; Belongs to the sulfur carrier protein TusA family.
  
  
 
0.913
Noca_2933
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Polysulphide reductase, NrfD; KEGG: rha:RHA1_ro11226 probable polysulphide reductase.
 
 
 
 0.874
Noca_2930
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro11229 possible hydroxyacylglutathione hydrolase.
 
  
 0.801
Noca_2934
Formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rha:RHA1_ro11225 hypothetical protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.797
Noca_2935
Protein of unknown function DUF59; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
     
 0.788
Noca_2936
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: aeh:Mlg_1668 sulfate transporter.
       0.783
Noca_3038
KEGG: dsy:DSY4470 hypothetical protein.
 
  
 0.653
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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