Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_2952PFAM: carbonic anhydrase; KEGG: tfu:Tfu_2132 carbonic anhydrase, putative. (166 aa)    
Predicted Functional Partners:
Noca_0359
Carbonate dehydratase; PFAM: carbonic anhydrase; KEGG: mag:amb0581 carbonic anhydrase.
    
 0.916
Noca_2950
Hypothetical protein; KEGG: rha:RHA1_ro08664 possible lipoprotein.
 
     0.819
Noca_2949
PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: sma:SAV2423 putative a subunit of topoisomerase IV.
       0.787
Noca_2951
PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro08665 probable multidrug resistance transporter, MFS superfamily.
 
     0.783
Noca_0287
KEGG: mbo:Mb3555c possible siderophore-binding protein.
   
 
 0.766
Noca_1164
PFAM: transferase hexapeptide repeat containing protein; KEGG: rha:RHA1_ro05076 possible carbonic anhydrase.
   
 
 0.766
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.661
Noca_2948
CoA-binding domain protein; PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: tfu:Tfu_2128 hypothetical protein.
     
 0.535
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: sma:SAV6743 putative phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.503
Noca_2477
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: tfu:Tfu_2039 hypothetical protein.
 
     0.447
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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