STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2952PFAM: carbonic anhydrase; KEGG: tfu:Tfu_2132 carbonic anhydrase, putative. (166 aa)    
Predicted Functional Partners:
Noca_0359
Carbonate dehydratase; PFAM: carbonic anhydrase; KEGG: mag:amb0581 carbonic anhydrase.
    
 0.916
Noca_2950
Hypothetical protein; KEGG: rha:RHA1_ro08664 possible lipoprotein.
 
     0.827
Noca_2949
PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: sma:SAV2423 putative a subunit of topoisomerase IV.
       0.808
Noca_2951
PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro08665 probable multidrug resistance transporter, MFS superfamily.
 
     0.785
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.681
Noca_0287
KEGG: mbo:Mb3555c possible siderophore-binding protein.
   
 
 0.668
Noca_1164
PFAM: transferase hexapeptide repeat containing protein; KEGG: rha:RHA1_ro05076 possible carbonic anhydrase.
   
 
 0.668
Noca_2948
CoA-binding domain protein; PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: tfu:Tfu_2128 hypothetical protein.
       0.509
Noca_1061
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
       0.478
Noca_2477
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: tfu:Tfu_2039 hypothetical protein.
 
     0.447
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.