STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_2971KEGG: tfu:Tfu_2217 hypothetical protein. (282 aa)    
Predicted Functional Partners:
Noca_3585
KEGG: tfu:Tfu_2575 hypothetical protein.
  
     0.672
Noca_1943
Hypothetical protein; KEGG: rha:RHA1_ro10028 possible peptidase.
  
     0.671
Noca_0276
KEGG: tfu:Tfu_0025 hypothetical protein.
  
     0.659
Noca_1939
KEGG: tfu:Tfu_0860 hypothetical protein.
  
     0.628
Noca_3586
Hypothetical protein; KEGG: sma:SAV3318 putative RNA polymerase ECF-subfamily sigma factor.
  
     0.607
Noca_0254
PFAM: amino acid-binding ACT domain protein; KEGG: pac:PPA1121 hypothetical protein.
  
     0.588
Noca_1794
Hypothetical protein; KEGG: tfu:Tfu_2396 putative cellulose-binding protein.
  
     0.568
Noca_0366
PFAM: type II secretion system protein; KEGG: tfu:Tfu_0126 putative integral membrane protein.
  
     0.557
Noca_2972
PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_3532 phage integrase.
       0.546
Noca_0128
KEGG: nha:Nham_2367 hypothetical protein.
  
     0.545
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.