STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3000PFAM: glycosyl transferase, group 1; KEGG: rha:RHA1_ro05187 possible glycosyl transferase. (384 aa)    
Predicted Functional Partners:
Noca_2999
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tfu:Tfu_2465 hypothetical protein.
 
   
 0.897
Noca_2998
KEGG: nfa:nfa54700 hypothetical protein.
 
   
 0.855
Noca_3002
PFAM: polysaccharide biosynthesis protein; KEGG: rha:RHA1_ro05189 possible xylose transporter.
 
  
 0.791
Noca_3001
KEGG: tfu:Tfu_2469 hypothetical protein.
 
     0.717
Noca_0397
KEGG: rha:RHA1_ro05190 hypothetical protein.
 
     0.691
Noca_2991
KEGG: rha:RHA1_ro05190 hypothetical protein.
 
     0.674
Noca_0267
Maltooligosyl trehalose hydrolase; KEGG: nfa:nfa18050 putative glycosyl hydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
   
 0.631
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.624
Noca_2996
KEGG: nfa:nfa24300 hypothetical protein.
 
   
 0.593
Noca_2997
PFAM: acyltransferase 3; KEGG: cef:CE2680 hypothetical protein.
 
  
 0.589
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.