STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3002PFAM: polysaccharide biosynthesis protein; KEGG: rha:RHA1_ro05189 possible xylose transporter. (435 aa)    
Predicted Functional Partners:
Noca_4579
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: sma:SAV5025 putative UDP-glucose 6-dehydrogenase.
  
  
 0.931
Noca_1401
PFAM: UDP-galactopyranose mutase; KEGG: rha:RHA1_ro04053 UDP-galactopyranose mutase.
  
  
 0.927
Noca_3001
KEGG: tfu:Tfu_2469 hypothetical protein.
 
     0.891
Noca_3000
PFAM: glycosyl transferase, group 1; KEGG: rha:RHA1_ro05187 possible glycosyl transferase.
 
  
 0.795
Noca_4185
PFAM: lipopolysaccharide biosynthesis; KEGG: fal:FRAAL5660 putative tyrosine-protein kinase.
  
  
 0.776
Noca_3990
Hypothetical protein; KEGG: rha:RHA1_ro02174 possible glycoprotein.
  
     0.724
Noca_4219
PFAM: sugar transferase; KEGG: bth:BT0611 glycosyltransferase.
  
  
 0.693
Noca_4200
KEGG: rha:RHA1_ro02104 hypothetical protein.
  
     0.683
Noca_2991
KEGG: rha:RHA1_ro05190 hypothetical protein.
  
     0.679
Noca_0109
KEGG: sco:SCO1740 hypothetical protein.
 
   
 0.667
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.