STRINGSTRING
Noca_3002 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3002" - Polysaccharide biosynthesis protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3002Polysaccharide biosynthesis protein (435 aa)    
Predicted Functional Partners:
Noca_3001
Hypothetical protein (555 aa)
 
          0.920
Noca_3931
Major facilitator transporter (449 aa)
   
          0.654
Noca_3170
Hypothetical protein (183 aa)
   
          0.634
Noca_3169
Hypothetical protein (198 aa)
   
          0.628
Noca_0242
Regulatory protein TetR (188 aa)
   
          0.611
Noca_4416
Hypothetical protein (213 aa)
   
          0.605
Noca_3709
Peptidase S15 (519 aa)
   
          0.598
Noca_4053
Hypothetical protein (266 aa)
   
          0.547
Noca_1511
Hypothetical protein (264 aa)
   
          0.519
Noca_4159
Hypothetical protein (276 aa)
   
          0.508
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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