STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3003PFAM: glycoside hydrolase 15-related; KEGG: sco:SCO1830 hypothetical protein. (602 aa)    
Predicted Functional Partners:
Noca_3004
KEGG: ade:Adeh_3192 hypothetical protein.
 
     0.778
Noca_3994
Trehalose 6-phosphate synthase; PFAM: glycosyl transferase, family 20; KEGG: pac:PPA0961 alpha,alpha-trehalose-phosphate synthase.
 
   
 0.731
Noca_3989
Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
   
 0.565
Noca_3005
PFAM: luciferase family protein; KEGG: mlo:mll2315 alkanal monooxygenase (bacterial liciferase alpha chain) like protein.
       0.517
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.505
Noca_1808
KEGG: sma:SAV2803 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain.
 
   
 0.403
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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