STRINGSTRING
Noca_3010 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3010" - Extracellular solute-binding protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3010Extracellular solute-binding protein (294 aa)    
Predicted Functional Partners:
Noca_3011
Polar amino acid ABC transporter, inner membrane subunit (264 aa)
  0.999
Noca_3012
ABC transporter-like protein (244 aa)
  0.994
Noca_4574
Polar amino acid ABC transporter inner membrane subunit (241 aa)
  0.992
Noca_4573
ABC transporter-like protein (245 aa)
  0.959
Noca_3009
Hypothetical protein (248 aa)
 
          0.874
Noca_3014
Inner-membrane translocator (330 aa)
       
  0.783
Noca_3013
Inner-membrane translocator (500 aa)
       
  0.783
Noca_3016
ABC transporter-like protein (260 aa)
       
  0.775
Noca_3015
ABC transporter-like protein (327 aa)
       
  0.768
Noca_3008
N-acetyltransferase GCN5 (191 aa)
              0.622
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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