STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3010Amino acid ABC transporter substrate-binding protein, PAAT family; PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: sma:SAV6400 putative ABC transporter substrate-binding protein; TC 3.A.1.3.-. (294 aa)    
Predicted Functional Partners:
Noca_3011
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6401 putative ABC transporter permease protein; TC 3.A.1.3.-.
 0.999
Noca_3012
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6402 putative ABC transporter ATP-binding protein; TC 3.A.1.3.-.
 
 0.997
Noca_4574
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6282 putative glutamine ABC transporter permease protein; TC 3.A.1.3.-.
 
 0.987
Noca_4573
Amino acid ABC transporter ATP-binding protein, PAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6281 putative ABC transporter ATP-binding protein - glutamine transport; TC 3.A.1.3.-.
 
 
 0.893
Noca_3009
PFAM: protein of unknown function DUF554; KEGG: tfu:Tfu_1187 conserved hypothetical protein.
 
     0.799
Noca_3022
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sco:SCO2026 putative glutamate synthase large subunit.
  
  
 0.651
Noca_3013
Amino acid/amide ABC transporter membrane protein 1, HAAT family; PFAM: inner-membrane translocator; KEGG: tfu:Tfu_1182 branched-chain amino acid ABC-type transport system permease components; TC 3.A.1.4.-.
     
 0.552
Noca_3014
Amino acid/amide ABC transporter membrane protein 2, HAAT family; PFAM: inner-membrane translocator; KEGG: tfu:Tfu_1183 branched-chain amino acid transport system permease protein; TC 3.A.1.4.-.
     
 0.544
Noca_3016
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro00994 ABC branched-chain amino acid transport, ATP-binding component; TC 3.A.1.4.-.
     
 0.542
Noca_3015
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro00993 ABC branched-chain amino acid transporter, ATP-binding component; TC 3.A.1.4.-.
     
 0.541
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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