Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
Noca_3038KEGG: dsy:DSY4470 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Noca_3036
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsy:DSY4468 hypothetical protein.
 
    0.951
Noca_3037
PFAM: DsrC family protein; KEGG: mta:Moth_1632 DsrC-like protein.
 
   
 0.951
Noca_2932
PFAM: SirA family protein; KEGG: rha:RHA1_ro11227 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
 
  
 0.664
Noca_0193
KEGG: rxy:Rxyl_3061 hypothetical protein.
 
     0.632
Noca_3143
PFAM: SirA family protein; KEGG: sma:SAV6046 aminotransferase; Belongs to the sulfur carrier protein TusA family.
 
  
 0.540
Noca_3035
KEGG: nfa:nfa38650 hypothetical protein.
       0.467
Noca_2930
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro11229 possible hydroxyacylglutathione hydrolase.
  
  
 0.445
Noca_2937
PFAM: beta-lactamase domain protein; SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro11243 hypothetical protein.
  
  
 0.445
Noca_1474
PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: sma:SAV3082 molybdopterin biosynthesis protein MoeB.
  
  
 0.420
Noca_0156
PFAM: Rhodanese domain protein; KEGG: sco:SCO3839 hypothetical protein.
 
  
 0.419
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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