STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3074PFAM: protein of unknown function DUF58; KEGG: sco:SCO2095 hypothetical protein. (424 aa)    
Predicted Functional Partners:
Noca_3075
PFAM: transglutaminase domain protein; KEGG: sma:SAV6110 hypothetical protein.
 
  
 0.974
Noca_3073
PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: sma:SAV6112 putative regulatory protein.
 
  
 0.880
Noca_1478
PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: mmc:Mmcs_0154 ATPase associated with various cellular activities, AAA_3.
 
  
 0.540
Noca_3910
PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: sco:SCO3018 putative regulatory protein.
 
  
 0.525
Noca_4689
PFAM: GCN5-related N-acetyltransferase; KEGG: fra:Francci3_4539 conserved hypothetical protein.
  
     0.483
Noca_2368
PFAM: sporulation and cell division protein SsgA; KEGG: fra:Francci3_1359 sporulation and cell division protein SsgA.
  
     0.470
Noca_2557
Hypothetical protein.
  
     0.461
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.