Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3078KEGG: fra:Francci3_1400 hypothetical protein. (143 aa)    
Predicted Functional Partners:
Noca_3077
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sma:SAV6108 methyltransferase.
 
     0.764
whiB-3
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.600
Noca_3076
KEGG: sco:SCO2097 hypothetical protein.
 
     0.591
Noca_4041
Hypothetical protein; KEGG: fal:FRAAL6457 putative integral membrane protein.
  
     0.556
Noca_3945
KEGG: sma:SAV3911 hypothetical protein.
  
     0.519
Noca_2575
KEGG: sma:SAV6479 hypothetical protein.
  
     0.495
Noca_2368
PFAM: sporulation and cell division protein SsgA; KEGG: fra:Francci3_1359 sporulation and cell division protein SsgA.
  
     0.494
Noca_1716
KEGG: fal:FRAAL5991 anti-sigma factor (partial match).
  
     0.487
Noca_0159
KEGG: rha:RHA1_ro02400 hypothetical protein.
  
     0.478
Noca_4388
PFAM: nitroreductase; KEGG: dde:Dde_1353 nitroreductase family protein.
  
     0.469
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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