Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_3087Hypothetical protein; KEGG: fra:Francci3_0800 HNH nuclease. (461 aa)    
Predicted Functional Partners:
Noca_1427
KEGG: pac:PPA1688 hypothetical protein.
  
     0.655
Noca_1939
KEGG: tfu:Tfu_0860 hypothetical protein.
  
     0.549
Noca_0276
KEGG: tfu:Tfu_0025 hypothetical protein.
  
     0.516
Noca_1509
PFAM: UvrD/REP helicase; KEGG: fra:Francci3_3799 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
 
   
 0.509
Noca_0299
KEGG: pac:PPA2178 hypothetical protein.
  
     0.507
Noca_0518
PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sma:SAV3383 lipoprotein.
 
     0.479
Noca_3581
KEGG: tfu:Tfu_2569 putative integral membrane protein.
  
     0.469
Noca_3957
PFAM: CutC family protein; KEGG: pac:PPA0471 putative copper homeostasis protein CutC; Belongs to the CutC family.
  
   
 0.455
Noca_3086
PFAM: protein kinase; PASTA domain containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: sco:SCO2110 putative eukaryotic-type serine/threonine protein kinase.
       0.452
Noca_1594
KEGG: sme:SMc02477 hypothetical protein.
 
     0.440
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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