Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Hypothetical protein (294 aa)
Predicted Functional Partners:
Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5’-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin (294 aa)
ABC transporter-like protein (597 aa)
ABC transporter-like protein (602 aa)
ABC transporter-like protein (1185 aa)
ABC transporter-like protein (627 aa)
ABC transporter-like protein (619 aa)
ABC transporter (595 aa)
ABC transporter-like protein (652 aa)
ABC transporter-like protein (578 aa)
Phosphatidate cytidylyltransferase (308 aa)
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162 Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614