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Noca_3105 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3105" - Alpha/beta hydrolase fold protein in Nocardioides sp. JS614
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3105Alpha/beta hydrolase fold protein (257 aa)    
Predicted Functional Partners:
Noca_3106
Hypothetical protein (154 aa)
              0.815
Noca_3104
Phospholipid/glycerol acyltransferase (247 aa)
              0.755
Noca_3107
LOR/SDH bifunctional protein (435 aa)
              0.659
Noca_3103
Flavin reductase domain-containing protein (167 aa)
              0.631
Noca_3102
Hypothetical protein (294 aa)
              0.622
mshB
LmbE family protein; Catalyzes the deacetylation of 1D-myo-inositol 2- acetamido-2-deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway (302 aa)
   
          0.410
Noca_4627
Hypothetical protein (435 aa)
              0.408
Noca_3205
4-aminobutyrate aminotransferase (450 aa)
              0.408
Noca_2017
Ribonuclease II (467 aa)
              0.408
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a ’tag peptide’, a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (159 aa)
              0.408
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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