Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_3112PFAM: cyclase/dehydrase; KEGG: sco:SCO2129 hypothetical protein. (146 aa)    
Predicted Functional Partners:
Noca_0964
PFAM: ABC-1 domain protein; KEGG: sma:SAV3068 ABC transporter ATP-binding protein.
  
 
 
 0.803
Noca_3111
Arsenite efflux ATP-binding protein ArsA; PFAM: Anion-transporting ATPase; KEGG: rxy:Rxyl_1314 arsenite-activated ATPase (ArsA); TC 3.A.4.1.1.
  
    0.772
Noca_4201
PFAM: helix-turn-helix domain protein; KEGG: fal:FRAAL0956 putative DNA-binding protein (partial match).
  
   
 0.768
Noca_3110
Hypothetical protein.
       0.752
Noca_0487
PFAM: phospholipid/glycerol acyltransferase; KEGG: fal:FRAAL0978 putative acyltransferase.
 
     0.741
Noca_3109
Glucokinase; TIGRFAM: putative glucokinase, ROK family; PFAM: ROK family protein; KEGG: fal:FRAAL5091 putative glucokinase (glucose kinase).
       0.730
Noca_3108
Glucokinase; PFAM: ROK family protein; KEGG: tfu:Tfu_0273 glucokinase ROK.
       0.708
Noca_0329
Arsenite efflux ATP-binding protein ArsA; PFAM: Anion-transporting ATPase; KEGG: sco:SCO3577 ion-transporting ATPase; TC 3.A.4.1.1.
 
    0.686
Noca_2543
PFAM: cytochrome oxidase assembly; KEGG: fra:Francci3_1653 cytochrome oxidase assembly.
 
  
  0.644
Noca_4049
KEGG: sco:SCO4205 hypothetical protein.
  
     0.635
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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