STRINGSTRING
Noca_3112 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3112" - Cyclase/dehydrase in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3112Cyclase/dehydrase (146 aa)    
Predicted Functional Partners:
Noca_3111
Arsenite-transporting ATPase (410 aa)
   
   
  0.866
Noca_3109
Glucokinase (313 aa)
              0.841
Noca_3108
Glucokinase (335 aa)
              0.816
Noca_0329
Anion-transporting ATPase (342 aa)
 
   
  0.799
Noca_3110
Hypothetical protein (154 aa)
              0.783
Noca_3113
AMP-dependent synthetase and ligase (600 aa)
   
        0.763
Noca_3931
Major facilitator transporter (449 aa)
   
          0.757
Noca_0328
Anion-transporting ATPase (402 aa)
 
   
  0.755
Noca_4201
Helix-turn-helix domain-containing protein (128 aa)
   
          0.749
Noca_4229
Hypothetical protein (98 aa)
   
        0.748
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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