STRINGSTRING
Noca_3116 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3116" - Type II secretion system protein E in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3116Type II secretion system protein E (491 aa)    
Predicted Functional Partners:
Noca_3118
Type II secretion system protein (304 aa)
 
   
  0.979
Noca_3117
Type II secretion system protein (326 aa)
 
   
  0.978
Noca_3115
Flp pilus assembly protein ATPase CpaE-like (395 aa)
 
          0.971
Noca_3114
SAF domain-containing protein (244 aa)
 
          0.953
Noca_3120
Response regulator receiver (212 aa)
              0.811
Noca_3119
ATPase domain-containing protein (535 aa)
              0.796
Noca_1254
Type II secretion system protein (312 aa)
 
          0.597
Noca_3113
AMP-dependent synthetase and ligase (600 aa)
              0.494
Noca_3121
Flp/Fap pilin component (67 aa)
              0.461
Noca_2224
Type II secretion system protein (303 aa)
              0.403
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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