STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3121PFAM: Flp/Fap pilin component. (67 aa)    
Predicted Functional Partners:
Noca_3115
KEGG: ade:Adeh_2826 Flp pilus assembly protein ATPase CpaE-like.
  
  
 0.895
Noca_3114
PFAM: SAF domain; KEGG: sus:Acid_4161 SAF domain.
  
  
 0.861
Noca_0786
PFAM: SAF domain; KEGG: rha:RHA1_ro05629 hypothetical protein.
  
  
 0.741
Noca_3117
PFAM: type II secretion system protein; KEGG: cte:CT0435 TadB protein.
  
  
 0.700
Noca_3118
PFAM: type II secretion system protein; KEGG: mxa:MXAN_4650 type II secretion system protein F domain protein.
  
  
 0.665
Noca_3116
PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein.
  
  
 0.620
Noca_3251
PFAM: TadE family protein; KEGG: bam:Bamb_1401 TadE family protein.
  
  
 0.501
Noca_3120
PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro00150 response regulator, two-component system.
  
    0.482
Noca_3119
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rxy:Rxyl_2612 GAF sensor signal transduction histidine kinase.
       0.461
Noca_0366
PFAM: type II secretion system protein; KEGG: tfu:Tfu_0126 putative integral membrane protein.
  
  
 0.426
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.