Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3121PFAM: Flp/Fap pilin component. (67 aa)    
Predicted Functional Partners:
Noca_1255
KEGG: fra:Francci3_0782 hypothetical protein.
     
  0.900
Noca_1544
Hypothetical protein.
     
  0.900
Noca_2225
Hypothetical protein.
     
  0.900
Noca_3115
KEGG: ade:Adeh_2826 Flp pilus assembly protein ATPase CpaE-like.
  
  
 0.894
Noca_3114
PFAM: SAF domain; KEGG: sus:Acid_4161 SAF domain.
  
  
 0.839
Noca_0786
PFAM: SAF domain; KEGG: rha:RHA1_ro05629 hypothetical protein.
  
  
 0.715
Noca_3117
PFAM: type II secretion system protein; KEGG: cte:CT0435 TadB protein.
  
  
 0.692
Noca_3118
PFAM: type II secretion system protein; KEGG: mxa:MXAN_4650 type II secretion system protein F domain protein.
  
  
 0.677
Noca_3116
PFAM: type II secretion system protein E; KEGG: dde:Dde_2363 type II/IV secretion system protein.
  
  
 0.623
Noca_3120
PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro00150 response regulator, two-component system.
  
    0.476
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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