Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3125KEGG: mmc:Mmcs_3288 hypothetical protein. (77 aa)    
Predicted Functional Partners:
Noca_3126
KEGG: sma:SAV6061 hypothetical protein.
       0.687
Noca_3128
DNA polymerase III, epsilon subunit; KEGG: fal:FRAAL5108 putative DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC, C subunit domain protein; UvrB/UvrC protein; Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease.
 
     0.685
Noca_3127
KEGG: sma:SAV6060 hypothetical protein.
       0.606
Noca_3129
PFAM: regulatory protein, AsnC/Lrp family; KEGG: tfu:Tfu_1025 putative transcriptional regulator.
       0.524
Noca_2494
KEGG: sma:SAV6509 hypothetical protein.
  
     0.512
Noca_0254
PFAM: amino acid-binding ACT domain protein; KEGG: pac:PPA1121 hypothetical protein.
  
     0.505
Noca_3123
KEGG: sma:SAV6064 hypothetical protein.
       0.505
Noca_3124
PFAM: NLP/P60 protein; KEGG: sco:SCO4793 NPL/P60 family secreted protein.
 
     0.489
Noca_1202
KEGG: pac:PPA0637 hypothetical protein.
  
     0.476
Noca_3122
PFAM: peptidase M48, Ste24p; KEGG: mta:Moth_1231 STE24 endopeptidase.
       0.464
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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