STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3129PFAM: regulatory protein, AsnC/Lrp family; KEGG: tfu:Tfu_1025 putative transcriptional regulator. (92 aa)    
Predicted Functional Partners:
Noca_3128
DNA polymerase III, epsilon subunit; KEGG: fal:FRAAL5108 putative DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC, C subunit domain protein; UvrB/UvrC protein; Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease.
       0.817
Noca_3130
KEGG: ppr:PBPRA0653 hypothetical protein.
       0.774
Noca_3127
KEGG: sma:SAV6060 hypothetical protein.
       0.646
Noca_3126
KEGG: sma:SAV6061 hypothetical protein.
       0.643
Noca_3125
KEGG: mmc:Mmcs_3288 hypothetical protein.
       0.577
Noca_0440
KEGG: sma:SAV4663 hypothetical protein.
  
     0.509
Noca_2948
CoA-binding domain protein; PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: tfu:Tfu_2128 hypothetical protein.
 
     0.488
Noca_3124
PFAM: NLP/P60 protein; KEGG: sco:SCO4793 NPL/P60 family secreted protein.
     
 0.465
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.