STRINGSTRING
Noca_3166 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3166" - Griselysin in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3166Griselysin (527 aa)    
Predicted Functional Partners:
Noca_3958
Hypothetical protein (118 aa)
   
          0.558
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate (247 aa)
              0.546
Noca_3966
Major facilitator transporter (1075 aa)
   
          0.529
Noca_3099
Major facilitator transporter (433 aa)
   
          0.468
Noca_3978
Sigma-70 factor (174 aa)
   
          0.438
Noca_3168
Hypothetical protein (171 aa)
              0.425
Noca_1711
Hypothetical protein (283 aa)
   
          0.419
Noca_2177
N-acetyltransferase GCN5 (200 aa)
   
          0.418
Noca_3006
DNA polymerase I (889 aa)
           
  0.405
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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