Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_3170KEGG: rha:RHA1_ro07229 hypothetical protein. (183 aa)    
Predicted Functional Partners:
Noca_3169
KEGG: rha:RHA1_ro07230 hypothetical protein.
 
     0.956
Noca_3172
PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: nfa:nfa22150 putative sigma factor.
     
 0.610
Noca_3171
PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1635 hypothetical protein.
       0.588
Noca_3168
KEGG: nfa:nfa6240 hypothetical protein.
       0.572
Noca_0137
PFAM: glutathione peroxidase; KEGG: nfa:nfa46650 putative glutathione peroxidase; Belongs to the glutathione peroxidase family.
    
 0.564
Noca_2197
PFAM: alkylmercury lyase; KEGG: nfa:pnf2590 putative alkylmercury lyase.
  
  
 0.540
Noca_0297
PFAM: Redoxin domain protein; KEGG: fal:FRAAL5492 hypothetical protein; putative thiol:disulfide interchange protein.
   
 0.515
Noca_0341
PFAM: Redoxin domain protein; KEGG: pac:PPA0224 hypothetical protein.
   
 0.515
Noca_0501
PFAM: Redoxin domain protein; KEGG: pac:PPA0325 hypothetical protein.
   
 0.515
Noca_2076
PFAM: Redoxin domain protein; KEGG: mbo:Mb1704 probable conserved lipoprotein DsbF.
   
 0.515
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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