STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3172PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: nfa:nfa22150 putative sigma factor. (292 aa)    
Predicted Functional Partners:
Noca_3171
PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1635 hypothetical protein.
 
  
 0.939
Noca_0431
TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: sma:SAV1635 hypothetical protein.
 
  
 0.723
Noca_3170
KEGG: rha:RHA1_ro07229 hypothetical protein.
     
 0.617
Noca_0825
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
  
 0.608
Noca_3169
KEGG: rha:RHA1_ro07230 hypothetical protein.
       0.588
Noca_3168
KEGG: nfa:nfa6240 hypothetical protein.
 
     0.516
Noca_1676
PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rha:RHA1_ro01261 sigma factor, sigma 70 type, group 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.460
Noca_1707
KEGG: tfu:Tfu_0549 anti-sigma factor.
 
 
 0.442
Noca_2549
Transcriptional regulator, ArsR family; PFAM: HMG-I and HMG-Y, DNA-binding domain protein; regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein; KEGG: sma:SAV6324 DNA-binding protein.
  
    0.435
Noca_2629
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nfa:nfa16520 hypothetical protein.
  
    0.419
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.