STRINGSTRING
Noca_3172 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3172" - Sigma-70 region 2 domain-containing protein in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3172Sigma-70 region 2 domain-containing protein (292 aa)    
Predicted Functional Partners:
Noca_3171
Carboxymuconolactone decarboxylase (201 aa)
 
          0.948
Noca_1677
Hypothetical protein (239 aa)
     
 
  0.747
Noca_3170
Hypothetical protein (183 aa)
              0.662
Noca_3169
Hypothetical protein (198 aa)
              0.662
Noca_0431
Alkylhydroperoxidase (195 aa)
 
          0.635
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1290 aa)
       
 
  0.536
Noca_3168
Hypothetical protein (171 aa)
              0.506
Noca_0825
Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity (169 aa)
 
          0.491
Noca_1212
Peptidase S1 and S6, chymotrypsin/Hap (471 aa)
   
   
  0.482
Noca_0884
Peptidase S1 and S6, chymotrypsin/Hap (417 aa)
   
   
  0.482
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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