STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3186Hypothetical protein; KEGG: mbo:Mb2137 probable integral membrane protein. (324 aa)    
Predicted Functional Partners:
Noca_3187
Riboflavin kinase / FMN adenylyltransferase; TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase; cytidylyltransferase; KEGG: lxx:Lxx07280 riboflavin kinase/ FMN adenyltransferase; Belongs to the ribF family.
       0.789
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
       0.729
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.729
Noca_4330
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sma:SAV6085 hypothetical protein.
  
     0.641
Noca_0189
KEGG: sco:SCO2686 LuxR-family transcriptional regulator.
  
     0.606
Noca_3002
PFAM: polysaccharide biosynthesis protein; KEGG: rha:RHA1_ro05189 possible xylose transporter.
  
     0.582
Noca_4200
KEGG: rha:RHA1_ro02104 hypothetical protein.
  
     0.575
Noca_2991
KEGG: rha:RHA1_ro05190 hypothetical protein.
  
     0.559
Noca_0128
KEGG: nha:Nham_2367 hypothetical protein.
  
     0.553
Noca_3990
Hypothetical protein; KEGG: rha:RHA1_ro02174 possible glycoprotein.
  
     0.527
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.