STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3205TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: rha:RHA1_ro05598 4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (450 aa)    
Predicted Functional Partners:
Noca_0646
PFAM: aldehyde dehydrogenase; KEGG: mlo:mll5719 succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.931
Noca_0692
PFAM: aldehyde dehydrogenase; KEGG: sme:SMa0260 GabD3 succinate-semialdehyde dehdyrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.931
Noca_1116
Succinate semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: mes:Meso_4451 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.931
Noca_1188
PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro00658 succinate-semialdehyde dehydrogenase (NAD(P)+).
  
 0.931
Noca_3529
PFAM: aldehyde dehydrogenase; KEGG: sco:SCO4913 putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.931
Noca_3633
PFAM: aldehyde dehydrogenase; KEGG: sma:SAV5016 putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.931
Noca_3634
PFAM: aldehyde dehydrogenase; KEGG: mpa:MAP2338 hypothetical protein.
  
 0.931
Noca_4004
PFAM: aldehyde dehydrogenase; KEGG: nfa:nfa46640 putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.931
Noca_4188
PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro01994 probable succinate-semialdehyde dehydrogenase (NAD(P)+).
  
 0.931
Noca_4473
PFAM: aldehyde dehydrogenase; KEGG: rpc:RPC_0104 succinate-semialdehyde dehydrogenase (NAD(P)+); Belongs to the aldehyde dehydrogenase family.
  
 0.931
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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