STRINGSTRING
Noca_3218 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3218" - Polysaccharide deacetylase in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3218Polysaccharide deacetylase (465 aa)    
Predicted Functional Partners:
Noca_3497
Glycosyl transferase family protein (496 aa)
 
   
  0.840
Noca_2832
Cellulose synthase (669 aa)
   
   
  0.840
Noca_1338
Glycosyl transferase family protein (772 aa)
 
   
  0.840
Noca_0721
General secretion pathway protein E (606 aa)
 
   
  0.840
Noca_3215
Binding-protein-dependent transport system inner membrane protein (282 aa)
              0.592
Noca_3217
Spermidine/putrescine ABC transporter ATPase (352 aa)
              0.587
Noca_3216
Extracellular solute-binding protein (405 aa)
              0.581
Noca_3214
Binding-protein-dependent transport systems inner membrane component (278 aa)
              0.581
Noca_3213
Hypothetical protein (233 aa)
              0.579
Noca_3006
DNA polymerase I (889 aa)
         
  0.526
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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