Noca_3218 protein (Nocardioides sp. JS614) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Noca_3218

PFAM: polysaccharide deacetylase; KEGG: jan:Jann_2517 polysaccharide deacetylase. (465 aa)

Predicted Functional Partners:

Noca_3216

0.536

Noca_3215

0.525

Noca_3214

0.520

Noca_3217

0.520

Noca_3213

0.507

Noca_2998

0.423

Your Current Organism:

Nocardioides sp. JS614

NCBI taxonomy Id: 196162
Other names: N. sp. JS614

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Noca_2998	Noca_3218	KEGG: nfa:nfa54700 hypothetical protein.	PFAM: polysaccharide deacetylase; KEGG: jan:Jann_2517 polysaccharide deacetylase.	0.423
Noca_3213	Noca_3214	Hypothetical protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1735 putative ABC transporter permease protein.	0.773
Noca_3213	Noca_3215	Hypothetical protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1736 putative ABC transporter permease protein.	0.773
Noca_3213	Noca_3216	Hypothetical protein.	PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV1737 putative ABC transporter binding protein.	0.773
Noca_3213	Noca_3217	Hypothetical protein.	KEGG: sma:SAV1738 putative ABC transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.773
Noca_3213	Noca_3218	Hypothetical protein.	PFAM: polysaccharide deacetylase; KEGG: jan:Jann_2517 polysaccharide deacetylase.	0.507
Noca_3214	Noca_3213	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1735 putative ABC transporter permease protein.	Hypothetical protein.	0.773
Noca_3214	Noca_3215	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1735 putative ABC transporter permease protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1736 putative ABC transporter permease protein.	0.996
Noca_3214	Noca_3216	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1735 putative ABC transporter permease protein.	PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV1737 putative ABC transporter binding protein.	0.998
Noca_3214	Noca_3217	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1735 putative ABC transporter permease protein.	KEGG: sma:SAV1738 putative ABC transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.997
Noca_3214	Noca_3218	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1735 putative ABC transporter permease protein.	PFAM: polysaccharide deacetylase; KEGG: jan:Jann_2517 polysaccharide deacetylase.	0.520
Noca_3215	Noca_3213	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1736 putative ABC transporter permease protein.	Hypothetical protein.	0.773
Noca_3215	Noca_3214	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1736 putative ABC transporter permease protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1735 putative ABC transporter permease protein.	0.996
Noca_3215	Noca_3216	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1736 putative ABC transporter permease protein.	PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV1737 putative ABC transporter binding protein.	0.998
Noca_3215	Noca_3217	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1736 putative ABC transporter permease protein.	KEGG: sma:SAV1738 putative ABC transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.998
Noca_3215	Noca_3218	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1736 putative ABC transporter permease protein.	PFAM: polysaccharide deacetylase; KEGG: jan:Jann_2517 polysaccharide deacetylase.	0.525
Noca_3216	Noca_3213	PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV1737 putative ABC transporter binding protein.	Hypothetical protein.	0.773
Noca_3216	Noca_3214	PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV1737 putative ABC transporter binding protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1735 putative ABC transporter permease protein.	0.998
Noca_3216	Noca_3215	PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV1737 putative ABC transporter binding protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1736 putative ABC transporter permease protein.	0.998
Noca_3216	Noca_3217	PFAM: extracellular solute-binding protein, family 1; KEGG: sma:SAV1737 putative ABC transporter binding protein.	KEGG: sma:SAV1738 putative ABC transporter ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.996