STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3221PFAM: Saccharopine dehydrogenase; KEGG: mmc:Mmcs_4946 saccharopine dehydrogenase. (407 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 
 0.926
Noca_2661
L-lysine 2,3-aminomutase; PFAM: Radical SAM domain protein; KEGG: mxa:MXAN_4699 putative L-lysine 2,3-aminomutase.
     
  0.900
Noca_3224
Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mmc:Mmcs_1825 agmatinase, putative; Belongs to the arginase family.
    
 0.745
Noca_3222
PFAM: aldehyde dehydrogenase; KEGG: rxy:Rxyl_2917 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.542
Noca_3225
PFAM: aminotransferase class-III; KEGG: sma:SAV2612 putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.493
Noca_3223
PFAM: Amidohydrolase 3; KEGG: rha:RHA1_ro00158 probable metal-dependant glycoprotease.
 
     0.474
Noca_1217
KEGG: rha:RHA1_ro02410 hypothetical protein.
 
     0.468
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.