Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_3235PFAM: metallophosphoesterase; KEGG: sma:SAV5405 hypothetical protein. (499 aa)    
Predicted Functional Partners:
Noca_3307
KEGG: mpa:MAP3677 hypothetical protein.
  
     0.543
Noca_1190
PFAM: conserved hypothetical protein 341; KEGG: sco:SCO4737 integral membrane protein.
 
     0.481
Noca_3234
KEGG: sma:SAV2616 hypothetical protein.
       0.476
Noca_0266
Lipoprotein; KEGG: sco:SCO7393 lipoprotein.
  
     0.467
Noca_2583
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cya:CYA_0909 glycerophosphoryl diester phosphodiesterase family protein.
 
  
 0.465
Noca_1836
Transcriptional regulator, CdaR family; KEGG: rha:RHA1_ro03580 hypothetical protein.
  
     0.460
Noca_1138
KEGG: rxy:Rxyl_2783 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.448
Noca_4403
Hypothetical protein; KEGG: mxa:MXAN_3638 peptidase, M19 family.
 
     0.440
Noca_1006
PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: xcv:XCV1708 histidine kinase-response regulator hybrid protein.
  
  
 0.433
Noca_3233
PFAM: protein of unknown function RIO1; KEGG: eba:ebA56 RIO-type serine/threonine protein kinase.
       0.432
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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