Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3244PFAM: peptidase M23B; KEGG: sco:SCO5623 hypothetical protein. (211 aa)    
Predicted Functional Partners:
xerC
Tyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
    0.484
Noca_1981
KEGG: fra:Francci3_3166 tetratricopeptide TPR_2.
 
   
 0.462
Noca_1436
KEGG: sco:SCO3010 hypothetical protein.
 
    0.457
Noca_1704
PFAM: protein of unknown function DUF159; KEGG: rha:RHA1_ro08499 hypothetical protein; Belongs to the SOS response-associated peptidase family.
  
    0.414
Noca_0225
KEGG: mbo:Mb0378c hypothetical protein.
   
    0.407
Noca_3976
KEGG: rha:RHA1_ro04499 hypothetical protein.
   
    0.407
Noca_4352
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tfu:Tfu_2449 tRNA/rRNA methyltransferase.
 
    0.401
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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