STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3249PFAM: major facilitator superfamily MFS_1; KEGG: cvi:CV1398 hypothetical protein. (385 aa)    
Predicted Functional Partners:
Noca_0806
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: ret:RHE_PC00149 putative sugar ABC transporter, substrate-binding protein; TC 3.A.1.2.-.
  
   
 0.607
Noca_0679
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: hso:HS_0765 ABC-type sugar-binding periplasmic protein; TC 3.A.1.2.-.
  
   
 0.560
Noca_3247
Mg chelatase, subunit ChlI; KEGG: sco:SCO5603 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase.
  
    0.528
Noca_3248
PFAM: protein of unknown function UPF0102; KEGG: sco:SCO5602 predicted endonuclease; Belongs to the UPF0102 family.
       0.518
Noca_3246
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: sma:SAV2631 putative DNA processing Smf-family protein.
       0.517
xerC
Tyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.464
Noca_0604
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; KEGG: fal:FRAAL2528 hypothetical protein; TC 3.A.1.2.-.
  
   
 0.461
Noca_3972
PFAM: PKD domain containing protein; KEGG: sde:Sde_3982 protein of unknown function DUF37.
  
     0.455
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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