STRINGSTRING
Noca_3265 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3265" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3265Hypothetical protein (122 aa)    
Predicted Functional Partners:
Noca_0013
Hypothetical protein (115 aa)
   
          0.716
Noca_3519
Hypothetical protein (135 aa)
   
          0.674
Noca_4689
N-acetyltransferase GCN5 (224 aa)
   
          0.602
Noca_2142
Hypothetical protein (352 aa)
   
          0.551
Noca_2350
Hypothetical protein (65 aa)
   
          0.550
Noca_1939
Hypothetical protein (106 aa)
   
          0.537
Noca_3112
Cyclase/dehydrase (146 aa)
   
          0.525
Noca_2179
N-acetyltransferase GCN5 (246 aa)
   
          0.510
ffh
Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY (523 aa)
              0.506
Noca_3628
Hypothetical protein (151 aa)
   
          0.503
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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