Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_3277PFAM: FAD linked oxidase domain protein; KEGG: rha:RHA1_ro01589 probable glycolate oxidase FAD-linked subunit. (453 aa)    
Predicted Functional Partners:
Noca_1737
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase, E1 component; catalytic domain of components of various dehydrogenase complexes; Transketolase, central region; KEGG: sco:SCO5281 putative 2-oxoglutarate dehydrogenase.
  
 
 0.920
Noca_3274
Alanine-glyoxylate aminotransferase apoenzyme; PFAM: aminotransferase, class V; KEGG: hma:rrnAC1999 aminotransferase class V.
  
 
 0.909
Noca_2155
D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: rha:RHA1_ro03236 probable D-lactate dehydrogenase (cytochrome).
  
  
 
0.908
Noca_4690
PFAM: aminotransferase, class I and II; KEGG: tfu:Tfu_1641 valine-pyruvate aminotransferase.
    
  0.908
Noca_4393
PFAM: HpcH/HpaI aldolase; KEGG: fra:Francci3_2805 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
     
  0.900
Noca_3507
PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: fra:Francci3_2007 FAD linked oxidase-like.
 
  
 0.888
Noca_1780
D-amino-acid:oxygen oxidoreductase (deaminating); PFAM: FAD dependent oxidoreductase; KEGG: rxy:Rxyl_0526 D-amino acid oxidase.
     
 0.801
Noca_3278
PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: sma:SAV6301 antibiotic transport protein.
  
    0.752
Noca_3279
Hypothetical protein.
       0.716
Noca_1816
PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: sco:SCO1081 putative electron transfer flavoprotein, alpha subunit.
 
 
 0.497
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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