Noca_3282 protein (Nocardioides sp. JS614) - STRING interaction network

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Score

Noca_3282

PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein. (192 aa)

Predicted Functional Partners:

rpmB

0.941

rpsC

0.874

rpsP

0.850

rplK

0.844

rpsF

0.844

rnc

0.842

rplM

0.838

rplU

0.834

trmD

0.833

rpsB

0.830

Your Current Organism:

Nocardioides sp. JS614

NCBI taxonomy Id: 196162
Other names: N. sp. JS614

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Noca_3282	rnc	Noca_3282	Noca_3281	PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein.	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.842
Noca_3282	rplK	Noca_3282	Noca_0696	PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein.	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.844
Noca_3282	rplM	Noca_3282	Noca_0889	PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.838
Noca_3282	rplU	Noca_3282	Noca_3451	PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.834
Noca_3282	rpmB	Noca_3282	Noca_3287	PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein.	PFAM: ribosomal protein L28; KEGG: sco:SCO5564 putative 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.941
Noca_3282	rpsB	Noca_3282	Noca_3243	PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein.	PFAM: ribosomal protein S2; KEGG: sco:SCO5624 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.830
Noca_3282	rpsC	Noca_3282	Noca_3899	PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.874
Noca_3282	rpsF	Noca_3282	Noca_4664	PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.844
Noca_3282	rpsP	Noca_3282	Noca_3260	PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein.	PFAM: ribosomal protein S16; KEGG: rha:RHA1_ro06535 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.850
Noca_3282	trmD	Noca_3282	Noca_3256	PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein.	tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	0.833
rnc	Noca_3282	Noca_3281	Noca_3282	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	PFAM: protein of unknown function DUF177; KEGG: tfu:Tfu_0649 conserved hypothetical protein.	0.842
rnc	rplK	Noca_3281	Noca_0696	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.858
rnc	rplM	Noca_3281	Noca_0889	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.879
rnc	rplU	Noca_3281	Noca_3451	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.744
rnc	rpmB	Noca_3281	Noca_3287	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	PFAM: ribosomal protein L28; KEGG: sco:SCO5564 putative 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.871
rnc	rpsB	Noca_3281	Noca_3243	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	PFAM: ribosomal protein S2; KEGG: sco:SCO5624 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.889
rnc	rpsC	Noca_3281	Noca_3899	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.787
rnc	rpsF	Noca_3281	Noca_4664	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.856
rnc	rpsP	Noca_3281	Noca_3260	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	PFAM: ribosomal protein S16; KEGG: rha:RHA1_ro06535 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.872
rnc	trmD	Noca_3281	Noca_3256	RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	tRNA (Guanine37-N(1)-) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	0.441