STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3290KEGG: tfu:Tfu_0641 hypothetical protein. (174 aa)    
Predicted Functional Partners:
Noca_3289
PFAM: regulatory protein, AsnC/Lrp family; KEGG: fal:FRAAL5817 hypothetical protein.
 
     0.844
thiL
Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.662
Noca_2621
KEGG: sma:SAV6637 hypothetical protein.
  
     0.518
Noca_3469
KEGG: sma:SAV5453 hypothetical protein.
  
     0.460
Noca_1398
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tfu:Tfu_0017 cell envelope-related transcriptional attenuator.
  
     0.459
Noca_3163
PFAM: branched-chain amino acid transport; KEGG: sco:SCO5764 hypothetical protein.
  
     0.436
Noca_3369
KEGG: dra:DR0603 cytidine/deoxycytidylate deaminase/NUDIX/methyltransferase domains protein.
  
     0.421
Noca_1508
PFAM: UvrD/REP helicase; KEGG: sco:SCO5183 ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
  
     0.416
Noca_1756
Hypothetical protein.
  
     0.415
Noca_2614
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: pac:PPA2190 membrane-associated protein.
  
     0.415
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.