STRINGSTRING
Noca_3290 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3290" - Hypothetical protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3290Hypothetical protein (174 aa)    
Predicted Functional Partners:
Noca_3289
AsnC family transcriptional regulator (78 aa)
 
          0.859
thiL
Thiamine monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1 (316 aa)
              0.615
Noca_3375
Luciferase family protein (308 aa)
   
          0.569
Noca_1202
Hypothetical protein (100 aa)
   
          0.556
Noca_1736
Hypothetical protein (58 aa)
   
          0.552
Noca_1939
Hypothetical protein (106 aa)
   
          0.492
Noca_3019
Hypothetical protein (244 aa)
   
          0.478
Noca_2229
Peptidoglycan-binding LysM (1086 aa)
   
          0.468
Noca_0276
Hypothetical protein (161 aa)
   
          0.449
Noca_1890
Hypothetical protein (318 aa)
   
          0.441
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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