Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Noca_3299PFAM: regulatory proteins, IclR; KEGG: sma:SAV2687 IclR-family transcriptional regulator. (240 aa)    
Predicted Functional Partners:
leuC
3-isopropylmalate dehydratase, large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
  
 0.784
leuD
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
  
    0.764
Noca_1994
KEGG: mmc:Mmcs_3360 hypothetical protein.
  
     0.713
Noca_0687
PFAM: regulatory proteins, IclR; KEGG: sco:SCO6669 transcriptional regulator.
  
     0.630
Noca_2977
PFAM: Allophanate hydrolase subunit 1; KEGG: sma:SAV6938 inhibitor of KinA.
  
    0.587
Noca_3768
PFAM: regulatory proteins, IclR; KEGG: sco:SCO7618 transcriptional regulator.
  
     0.581
Noca_1292
SMART: regulatory proteins, IclR; KEGG: sma:SAV5141 differentiation regulon (IclR-family transcriptional regulator).
  
     0.529
Noca_2946
KEGG: sco:SCO5843 hypothetical protein.
  
     0.477
Noca_0092
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: tfu:Tfu_1968 allophanate hydrolase subunit 2.
  
    0.473
Noca_2976
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: sma:SAV6937 antagonist of KipI.
  
    0.473
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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