STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3305PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rpe:RPE_3197 NAD-dependent epimerase/dehydratase. (314 aa)    
Predicted Functional Partners:
Noca_4579
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: sma:SAV5025 putative UDP-glucose 6-dehydrogenase.
  
 0.945
Noca_1401
PFAM: UDP-galactopyranose mutase; KEGG: rha:RHA1_ro04053 UDP-galactopyranose mutase.
 
 
 0.942
Noca_4161
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; KEGG: pac:PPA0069 UDP-glucose 4-epimerase.
 
 0.930
Noca_0486
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: fra:Francci3_0479 NAD-dependent epimerase/dehydratase.
  
  
 
0.918
Noca_0790
PFAM: UTP--glucose-1-phosphate uridylyltransferase; KEGG: pac:PPA0489 UTP--glucose-1-phosphate uridylyltransferase.
     
 0.905
Noca_2993
PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: aba:Acid345_3613 NAD-dependent epimerase/dehydratase.
     
  0.900
Noca_3303
PFAM: Bile acid:sodium symporter; KEGG: rpe:RPE_3198 bile acid:sodium symporter.
 
 
   0.865
Noca_3304
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sil:SPO0795 oxidoreductase, short chain dehydrogenase/reductase family.
 
 
 
 0.840
Noca_3306
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: afu:AF2100 acetolactate synthase large subunit.
  
  
 0.787
rpsZ
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 0.711
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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