Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Noca_3307KEGG: mpa:MAP3677 hypothetical protein. (368 aa)    
Predicted Functional Partners:
Noca_1778
Hypothetical protein; KEGG: lbl:LBL_1155 plastocyanin.
  
     0.581
Noca_4435
KEGG: nfa:nfa44140 hypothetical protein.
  
     0.566
Noca_3306
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: afu:AF2100 acetolactate synthase large subunit.
     
 0.555
Noca_3303
PFAM: Bile acid:sodium symporter; KEGG: rpe:RPE_3198 bile acid:sodium symporter.
     
 0.551
Noca_3235
PFAM: metallophosphoesterase; KEGG: sma:SAV5405 hypothetical protein.
  
     0.543
Noca_3304
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: sil:SPO0795 oxidoreductase, short chain dehydrogenase/reductase family.
       0.539
Noca_3305
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rpe:RPE_3197 NAD-dependent epimerase/dehydratase.
       0.539
Noca_2583
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cya:CYA_0909 glycerophosphoryl diester phosphodiesterase family protein.
 
     0.522
Noca_1678
PFAM: CDP-alcohol phosphatidyltransferase; sulfatase; KEGG: sma:SAV5650 hypothetical protein.
  
     0.459
Noca_1682
KEGG: sma:SAV1793 hypothetical protein.
  
     0.442
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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