Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3326PFAM: PilT protein domain protein; KEGG: fra:Francci3_0141 PilT protein-like. (143 aa)    
Predicted Functional Partners:
Noca_3325
TIGRFAM: prevent-host-death family protein; KEGG: fra:Francci3_0142 prevent-host-death protein.
 
 
 
 0.992
Noca_0300
KEGG: fal:FRAAL0085 hypothetical protein.
  
 
 0.830
Noca_3211
KEGG: nfa:nfa6110 hypothetical protein.
 
     0.708
Noca_3570
PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: sco:SCO3537 DNA-binding protein.
 
  
 0.638
Noca_2025
KEGG: fra:Francci3_0955 conserved hypothetical protein.
 
   
 0.580
Noca_1153
KEGG: rha:RHA1_ro08006 possible growth inhibitor.
 
   
 0.564
Noca_3324
KEGG: sus:Acid_1047 conserved hypothetical cytosolic protein.
       0.558
Noca_3327
PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_1758 alcohol dehydrogenase, zinc-binding protein.
       0.554
Noca_1538
KEGG: fra:Francci3_1784 hypothetical protein.
 
     0.553
Noca_1547
KEGG: fra:Francci3_3328 putative membrane protein.
  
     0.480
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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