Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_33375-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pac:PPA1366 putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase. (269 aa)    
Predicted Functional Partners:
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
  
  
 0.866
Noca_3335
PFAM: Abortive infection protein; KEGG: pac:PPA1365 conserved protein YyaK.
       0.840
Noca_0038
PFAM: Dimethylmenaquinone methyltransferase; KEGG: pol:Bpro_2296 dimethylmenaquinone methyltransferase.
    
 0.787
Noca_3338
PFAM: peptidase S45, penicillin amidase; KEGG: dra:DRA0255 aculeacin A acylase.
       0.678
Noca_0657
PFAM: homogentisate 1,2-dioxygenase; Cupin 2, conserved barrel domain protein; KEGG: rha:RHA1_ro02311 homogentisate 1,2-dioxygenase.
  
  
 0.660
Noca_3339
PFAM: MOSC domain containing protein; KEGG: rpe:RPE_1637 MOSC domain containing protein.
       0.533
Noca_3340
KEGG: nfa:nfa25070 hypothetical protein.
       0.457
Noca_1737
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase, E1 component; catalytic domain of components of various dehydrogenase complexes; Transketolase, central region; KEGG: sco:SCO5281 putative 2-oxoglutarate dehydrogenase.
  
 
 0.412
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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