STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3338PFAM: peptidase S45, penicillin amidase; KEGG: dra:DRA0255 aculeacin A acylase. (789 aa)    
Predicted Functional Partners:
Noca_3335
PFAM: Abortive infection protein; KEGG: pac:PPA1365 conserved protein YyaK.
       0.678
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
       0.678
Noca_3337
5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pac:PPA1366 putative 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
       0.678
Noca_3339
PFAM: MOSC domain containing protein; KEGG: rpe:RPE_1637 MOSC domain containing protein.
       0.588
Noca_3250
KEGG: bxe:Bxe_A2791 predicted membrane protein.
  
     0.537
Noca_4560
PFAM: Phosphoglycerate mutase; KEGG: mxa:MXAN_5898 hypothetical protein.
  
     0.495
Noca_4403
Hypothetical protein; KEGG: mxa:MXAN_3638 peptidase, M19 family.
 
  
 0.480
Noca_3340
KEGG: nfa:nfa25070 hypothetical protein.
       0.440
Noca_0139
PFAM: zinc finger, SWIM domain protein; KEGG: sma:SAV368 hypothetical protein.
  
     0.420
Noca_2792
Diacylglycerol O-acyltransferase; PFAM: protein of unknown function UPF0089; KEGG: rha:RHA1_ro06855 hypothetical protein; Belongs to the long-chain O-acyltransferase family.
 
    0.418
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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