Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Noca_3344KEGG: bcn:Bcen_5567 hypothetical protein. (173 aa)    
Predicted Functional Partners:
Noca_3345
PFAM: peptidase M23B; KEGG: syf:Synpcc7942_0344 probable peptidase.
 
     0.832
Noca_3346
KEGG: dra:DR0234 hypothetical protein.
 
     0.804
Noca_3343
PFAM: dienelactone hydrolase; KEGG: ret:RHE_CH02612 hypothetical protein.
       0.778
Noca_3347
PFAM: pentapeptide repeat protein; KEGG: fal:FRAAL1624 hypothetical protein; putative pentapeptide repeat domain.
       0.773
Noca_3342
PFAM: Excalibur domain protein; KEGG: bld:BLi04157 YhjA.
       0.620
Noca_2116
PFAM: DGPFAETKE family protein; KEGG: ade:Adeh_1007 DGPFAETKE domain-containing protein.
  
     0.558
Noca_0906
KEGG: sma:SAV2206 hypothetical protein.
  
     0.537
Noca_4606
PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4151 acetyltransferase.
 
     0.513
Noca_0518
PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sma:SAV3383 lipoprotein.
 
     0.495
Noca_1907
Hypothetical protein.
  
     0.493
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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