STRINGSTRING
Noca_3347 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3347" - Pentapeptide repeat-containing protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3347Pentapeptide repeat-containing protein (193 aa)    
Predicted Functional Partners:
Noca_3346
Hypothetical protein (89 aa)
 
          0.889
Noca_3343
Dienelactone hydrolase (200 aa)
   
        0.863
Noca_3345
Peptidase M23B (188 aa)
              0.859
Noca_3344
Hypothetical protein (173 aa)
              0.859
Noca_3342
Excalibur domain-containing protein (94 aa)
              0.697
Noca_2937
Beta-lactamase domain-containing protein (452 aa)
 
      0.527
Noca_2321
5’-nucleotidase domain-containing protein (731 aa)
       
      0.512
Noca_1299
5’-nucleotidase domain-containing protein (615 aa)
       
      0.512
Noca_3650
Beta-lactamase domain-containing protein (207 aa)
   
      0.465
Noca_2930
Beta-lactamase domain-containing protein (378 aa)
   
      0.465
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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