STRINGSTRING
Noca_3348 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3348" - TetR family transcriptional regulator in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3348TetR family transcriptional regulator (185 aa)    
Predicted Functional Partners:
Noca_3351
Cobalt transport protein (204 aa)
 
          0.849
Noca_3350
ABC transporter-like protein (230 aa)
 
          0.799
Noca_3349
BioY protein (207 aa)
 
          0.698
Noca_2519
Hypothetical protein (100 aa)
   
          0.593
Noca_2455
Hypothetical protein (184 aa)
   
          0.537
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism (374 aa)
 
          0.533
Noca_1223
Hypothetical protein (163 aa)
   
          0.525
Noca_3340
Hypothetical protein (303 aa)
   
          0.519
Noca_0374
Methyltransferase small (486 aa)
   
          0.514
Noca_1309
NUDIX hydrolase (122 aa)
   
          0.468
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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