STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3350PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cjk:jk1119 ABC-type cobalt transport system ATPase component. (230 aa)    
Predicted Functional Partners:
Noca_3351
PFAM: cobalt transport protein; KEGG: rha:RHA1_ro05259 hypothetical protein.
 
 0.999
Noca_3349
PFAM: BioY protein; KEGG: cef:CE1851 putative biotin synthase.
 
 
 0.998
Noca_1329
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: sma:SAV3607 putative integral membrane transport protein.
 
 
 0.855
Noca_3431
PFAM: cobalt transport protein; KEGG: sma:SAV5848 integral membrane protein.
  
 
 0.821
Noca_3348
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; Tetracyclin repressor domain protein; KEGG: mmc:Mmcs_3074 transcriptional regulator, TetR family.
 
   
 0.748
Noca_1327
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: sma:SAV3606 putative membrane protein.
 
 
 0.681
Noca_1328
KEGG: sma:SAV3606 putative membrane protein.
  
 
 0.609
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.569
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
     
 0.564
Noca_2892
TIGRFAM: precorrin-3B C17-methyltransferase; precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tfu:Tfu_0316 precorrin-3B C17-methyltransferase region:precorrin-2 C20-methyltransferase.
  
  
 0.552
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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