STRINGSTRING
Noca_3352 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3352" - Putative transcriptional regulator in Nocardioides sp. JS614
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3352Putative transcriptional regulator (228 aa)    
Predicted Functional Partners:
Noca_3353
Hypothetical protein (146 aa)
 
        0.918
Noca_3354
GTP cyclohydrolase (219 aa)
              0.658
Noca_3355
FAD-dependent pyridine nucleotide-disulfide oxidoreductase (392 aa)
              0.639
Noca_0840
Regulatory protein MarR (170 aa)
   
          0.596
Noca_3981
Transcriptional regulator (231 aa)
   
          0.588
Noca_3424
Hypothetical protein (362 aa)
   
          0.577
Noca_4599
Elongation factor G (701 aa)
   
          0.547
Noca_0479
ABC transporter (245 aa)
 
          0.505
Noca_0654
Hypothetical protein (522 aa)
   
          0.499
Noca_0514
Lysine exporter protein LysE/YggA (202 aa)
   
          0.494
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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