STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3353KEGG: rha:RHA1_ro04235 possible membrane protein. (146 aa)    
Predicted Functional Partners:
Noca_3352
KEGG: rha:RHA1_ro04234 possible transcriptional regulator.
 
     0.838
folE-2
PFAM: GTP cyclohydrolase I; KEGG: nfa:nfa31470 putative GTP cyclohydrolase I.
       0.791
Noca_3355
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: sco:SCO7117 ferredoxin reductase.
       0.785
Noca_0985
KEGG: rha:RHA1_ro00065 hypothetical protein.
  
     0.645
Noca_4384
KEGG: ret:RHE_CH02031 putative gualylate cyclase protein.
  
   
 0.613
Noca_4643
PFAM: Sigma-70, region 4 type 2; KEGG: rpa:RPA1819 RNA polymerase ECF-type sigma factor, possible FecI.
 
     0.512
Noca_2453
KEGG: tfu:Tfu_1082 hypothetical protein.
      
 0.441
Noca_0160
methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr1095 hypothetical protein.
  
     0.430
Noca_0193
KEGG: rxy:Rxyl_3061 hypothetical protein.
  
     0.406
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.