STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3370PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmc:Mmcs_1188 methyltransferase type 11. (200 aa)    
Predicted Functional Partners:
Noca_3371
KEGG: nfa:nfa32370 hypothetical protein.
       0.654
Noca_3372
PFAM: protein of unknown function DUF161; KEGG: sco:SCO1418 integral membrane protein.
       0.651
Noca_0592
PFAM: monooxygenase, FAD-binding; KEGG: bur:Bcep18194_A4962 hypothetical protein.
  
 0.549
Noca_0653
PFAM: monooxygenase, FAD-binding; KEGG: rha:RHA1_ro03540 pentachlorophenol monooxygenase.
  
 0.549
Noca_2889
Protoporphyrin IX magnesium-chelatase; KEGG: tfu:Tfu_0313 Mg-chelatase subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; von Willebrand factor, type A; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
  
 
 0.538
Noca_4348
KEGG: sco:SCO3647 hypothetical protein.
  
     0.481
Noca_3373
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: rha:RHA1_ro05556 transcriptional regulator/aminotransferase.
       0.476
Noca_2522
PFAM: beta-lactamase domain protein; KEGG: fra:Francci3_1630 beta-lactamase-like.
 
     0.461
mca
LmbE family protein; A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl-inositol) S- conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics; Belongs to the MshB deacetylase family. Mca subfamily.
 
   
 0.445
Noca_3340
KEGG: nfa:nfa25070 hypothetical protein.
 
     0.416
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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