STRINGSTRING
Noca_3378 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3378" - Purine catabolism PurC domain-containing protein in Nocardioides sp. JS614
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3378Purine catabolism PurC domain-containing protein (445 aa)    
Predicted Functional Partners:
Noca_0087
CdaR family transcriptional regulator (383 aa)
   
          0.752
Noca_3379
Amino acid permease-associated protein (505 aa)
 
          0.720
Noca_4276
CdaR family transcriptional regulator (552 aa)
   
          0.698
Noca_3380
Short-chain dehydrogenase/reductase SDR (240 aa)
 
          0.629
Noca_3382
Agmatinase (321 aa)
 
          0.585
Noca_3383
Polysaccharide deacetylase (299 aa)
 
          0.581
Noca_3381
Short-chain dehydrogenase/reductase SDR (257 aa)
              0.569
Noca_1991
CdaR family transcriptional regulator (403 aa)
   
          0.492
Noca_1111
Hypothetical protein (328 aa)
   
          0.485
Noca_0097
Regulator of polyketide synthase expression-like (524 aa)
   
          0.453
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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