Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
Noca_3378Transcriptional regulator, CdaR family; PFAM: purine catabolism PurC domain protein; KEGG: mmc:Mmcs_5287 transcriptional regulator, CdaR. (445 aa)    
Predicted Functional Partners:
Noca_1111
KEGG: pae:PA1915 hypothetical protein.
  
     0.701
Noca_0087
Transcriptional regulator, CdaR family; KEGG: sma:SAV2725 transcriptional regulator.
 
     0.653
Noca_3379
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; KEGG: mmc:Mmcs_5286 amino acid permease-associated region; TC 2.A.3.
 
     0.578
Noca_4276
Transcriptional regulator, CdaR family; KEGG: rha:RHA1_ro04370 hypothetical protein.
 
     0.577
Noca_0608
Transcriptional regulator, CdaR family; KEGG: rha:RHA1_ro03774 hypothetical protein.
 
     0.556
Noca_0097
Regulator of polyketide synthase expression-like protein; KEGG: sco:SCO1052 regulatory protein.
  
     0.540
Noca_0589
KEGG: rha:RHA1_ro03774 hypothetical protein.
  
     0.537
Noca_3380
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_5285 short-chain dehydrogenase/reductase SDR.
       0.501
Noca_3381
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_5284 short-chain dehydrogenase/reductase SDR.
       0.501
Noca_3382
Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mmc:Mmcs_5283 agmatinase, putative; Belongs to the arginase family.
 
     0.501
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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