Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_3379Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; KEGG: mmc:Mmcs_5286 amino acid permease-associated region; TC 2.A.3. (505 aa)    
Predicted Functional Partners:
Noca_3382
Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mmc:Mmcs_5283 agmatinase, putative; Belongs to the arginase family.
 
 
 0.834
Noca_3380
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_5285 short-chain dehydrogenase/reductase SDR.
   
   0.787
Noca_3381
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_5284 short-chain dehydrogenase/reductase SDR.
   
   0.787
Noca_3383
PFAM: polysaccharide deacetylase; KEGG: mmc:Mmcs_2257 polysaccharide deacetylase.
       0.608
Noca_3378
Transcriptional regulator, CdaR family; PFAM: purine catabolism PurC domain protein; KEGG: mmc:Mmcs_5287 transcriptional regulator, CdaR.
 
     0.578
Noca_3224
Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mmc:Mmcs_1825 agmatinase, putative; Belongs to the arginase family.
 
 
 0.542
Noca_1114
PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: pfl:PFL_5732 cytosine/purine/uracil/thiamine/allantoin permease family protein; Belongs to the purine-cytosine permease (2.A.39) family.
  
  
 0.519
Noca_0197
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: sco:SCO2226 bi-functional protein (secreted alpha-amylase/dextrinase).
   
 0.426
Noca_0775
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: tfu:Tfu_0833 alpha amylase, catalytic subdomain.
   
 0.426
Noca_1267
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: dra:DR0933 alpha-amlyase.
   
 0.426
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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