STRINGSTRING
Noca_3381 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_3381" - Short-chain dehydrogenase/reductase SDR in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3381Short-chain dehydrogenase/reductase SDR (257 aa)    
Predicted Functional Partners:
Noca_3379
Amino acid permease-associated protein (505 aa)
 
     
  0.888
Noca_3380
Short-chain dehydrogenase/reductase SDR (240 aa)
 
       
0.887
Noca_4562
Short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase (736 aa)
   
  0.881
Noca_2854
3-hydroxyacyl-CoA dehydrogenase (696 aa)
   
  0.881
Noca_2781
Dehydratase (282 aa)
 
  0.763
Noca_4135
Dehydratase (155 aa)
   
  0.753
Noca_4109
Dehydratase (150 aa)
   
  0.753
Noca_4064
Dehydratase (173 aa)
   
  0.753
Noca_3534
Dehydratase (150 aa)
   
  0.753
Noca_2849
Dehydratase (288 aa)
   
  0.753
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
Server load: low (7%) [HD]