STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_3383PFAM: polysaccharide deacetylase; KEGG: mmc:Mmcs_2257 polysaccharide deacetylase. (299 aa)    
Predicted Functional Partners:
Noca_3382
Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mmc:Mmcs_5283 agmatinase, putative; Belongs to the arginase family.
  
  
 0.798
Noca_3380
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_5285 short-chain dehydrogenase/reductase SDR.
       0.611
Noca_3381
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: mmc:Mmcs_5284 short-chain dehydrogenase/reductase SDR.
       0.611
Noca_3379
Amino acid/polyamine/organocation transporter, APC superfamily; PFAM: amino acid permease-associated region; KEGG: mmc:Mmcs_5286 amino acid permease-associated region; TC 2.A.3.
       0.608
Noca_1550
PFAM: polysaccharide deacetylase; KEGG: sco:SCO1129 secreted deacetylase.
  
     0.511
Noca_0094
PFAM: Asp/Glu racemase; KEGG: chy:CHY_1338 hydantoin racemase.
 
     0.510
Noca_3417
PFAM: Asp/Glu racemase; KEGG: dar:Daro_1336 hydantoin racemase.
 
     0.456
Noca_0721
PFAM: glycosyl transferase, family 2; General secretory system II, protein E domain protein; KEGG: ttj:TTHA0743 glycosyltransferase related protein.
  
  
 0.437
Noca_1338
PFAM: glycosyl transferase, family 2; KEGG: eba:ebA6116 putative beta-(1-3)-glucosyl transferase.
  
  
 0.437
Noca_2832
Cellulose synthase (UDP-forming); PFAM: glycosyl transferase, family 2; KEGG: rha:RHA1_ro03574 probable cellulose synthase catalytic subunit.
  
  
 0.437
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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